convert_to_projection

convert_to_projection(series_key: str, locations_tar: TarFile, frame: int, regions: list[str], box: tuple[int, int, int], ds: float, dt: float, scale: int, colors: dict[str, str]) → Figure

Convert data to projection figure.

Parameters:

• series_key – Simulation series key.

• locations_tar – Archive of location data.

• frame – Frame number.

• regions – List of regions.

• box – Size of bounding box.

• ds – Spatial scaling in um/voxel.

• dt – Temporal scaling in hours/tick.

• scale – Size of scale bar (in um).

• colors – Map of region to colors.

Returns:

Projection figure.

add_frame_timestamp(ax: Axes, length: int, width: int, dt: float, frame: int, color: str) → None

Add a frame timestamp to figure axes.

Parameters:

• ax – Axes object.

• length – Length of bounding box.

• width – Width of bounding box.

• dt – Temporal scaling in hours/tick.

• frame – Frame number.

• color – Timestamp color.

add_frame_scalebar(ax: Axes, length: int, width: int, ds: float, scale: int, color: str) → None

Add a frame scalebar to figure axes.

Parameters:

• ax – Axes object.

• length – Length of bounding box.

• width – Width of bounding box.

• ds – Spatial scaling in um/voxel.

• scale – Size of scale bar (in um).

• color – Scalebar color.